All pull requests

Pull requests

• Add an Open Search preset and a Mass Shifts page that matches shifts to Unimod

  #49·t0mdavid-m opened Oct 28, 2026Member·

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  2

  

• PSM tables: show modifications as labels, ProForma or OpenMS; ProForma in exports

  #48·t0mdavid-m opened Oct 26, 2026Member·

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  1

  

• Add a Samples page: PSMs, peptides and proteins per sample, by condition

  #47·t0mdavid-m opened Oct 25, 2026Member·

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  2

  

• Add a Run Overview page: key figures and a per-file summary

  #46·t0mdavid-m opened Oct 24, 2026Member·

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  1

  

• Search cRAP contaminants with the database, flag them and hide them from protein results

  #45·t0mdavid-m opened Oct 23, 2026Member·

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  1

  

• Filtered PSMs: fragment mass error plot and b/y ion table for the selected PSM

  #44·t0mdavid-m opened Oct 21, 2026Member·

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  1

  

• Add a Proteins page: protein table with coverage, linked peptides and PSMs

  #43·t0mdavid-m opened Oct 20, 2026Member·

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  1

  

• Add an Identification QC page (score distribution, precursor error, PSMs per file)

  #42·t0mdavid-m opened Oct 20, 2026Member·

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  1

  

• Use OpenMS-Insight Table for large tables

  #38·hjn0415a opened Sep 29, 2026Contributor·

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  1

• Update LFQ/TMT quickstart and fix result state handling

  #37·JKVISION1101 opened Sep 28, 2026Contributor·

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  1

• TMT-LFQ-OpenMS insight integration

  #29·JKVISION1101 opened Jul 17, 2026Contributor·

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  16

• feat: integrate openms-insight into quantms

  #28·hjn0415a opened Jun 25, 2026Contributor·

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  17

• feat: implement full TMT analysis pipeline, result visualizations, and Windows compatibility.

  #26·hjn0415a opened Jun 16, 2026Contributor·3 tasks done·

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  18

• Remove vestigial template files breaking all CI workflows

  #15·t0mdavid-m with CopilotAI opened Mar 14, 2026·

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  1

  12

  

• feat: add GO enrichment analysis page for ProteomicsLFQ results

  #8·hjn0415a opened Feb 4, 2026Contributor·

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  7

• deps: bump markupsafe from 3.0.2 to 3.0.3

  dependenciespython
  #5·dependabot[bot] opened Jan 23, 2026Bot·

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• deps: bump urllib3 from 2.3.0 to 2.6.3

  dependenciespython
  #4·dependabot[bot] opened Jan 23, 2026Bot·

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• deps: bump idna from 3.10 to 3.11

  dependenciespython
  #3·dependabot[bot] opened Jan 23, 2026Bot·

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• deps: bump kiwisolver from 1.4.8 to 1.4.9

  dependenciespython
  #2·dependabot[bot] opened Jan 23, 2026Bot·

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• deps: bump certifi from 2025.1.31 to 2026.1.4

  dependenciespython
  #1·dependabot[bot] opened Jan 23, 2026Bot·

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