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@cnio-bu

CNIO Bioinformatics Unit

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  1. beyondcell beyondcell Public

    Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

    R 62 7

  2. bollito bollito Public

    A single-cell RNA-seq pipeline

    R 28 15

  3. cluster_rnaseq cluster_rnaseq Public

    Python 5 14

  4. pandrugs-db pandrugs-db Public

    Perl 5 2

  5. myeloma-epi-sv myeloma-epi-sv Public

    Python 3 1

  6. tcca tcca Public

    A repository holding the code for the generation of a therapeutic cancer cell atlas

    R 3

Repositories

Showing 10 of 25 repositories
  • cnio-bu.github.io Public

    Source code for generating https://cnio-bu.github.io

    cnio-bu/cnio-bu.github.io's past year of commit activity
    2 2 2 0 Updated Oct 21, 2026
  • tcca Public

    A repository holding the code for the generation of a therapeutic cancer cell atlas

    cnio-bu/tcca's past year of commit activity
    R 3 MIT 0 0 0 Updated Oct 20, 2026
  • website Public
    cnio-bu/website's past year of commit activity
    SCSS 0 9 1 0 Updated Oct 19, 2026
  • basecalling_ont Public

    Snakemake workflow for Oxford Nanopore basecalling with Dorado and quality control.

    cnio-bu/basecalling_ont's past year of commit activity
    Python 0 1 0 0 Updated Oct 15, 2026
  • clonucopya Public

    A snakemake workflow to explore clonality and therapeutic strategies in WGS/WES data in the context of cancer therapeutic heterogeneity

    cnio-bu/clonucopya's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 30, 2026
  • cnio-bu/myeloma-epi-sv's past year of commit activity
    Python 3 MIT 1 1 0 Updated Jun 30, 2026
  • drug_susceptibility_collection Public

    A snakemake pipeline to generate the transcriptomic signatures of drug susceptibility used in beyondcell

    cnio-bu/drug_susceptibility_collection's past year of commit activity
    R 1 5 0 0 Updated Mar 13, 2026
  • cnio-bu/cluster_rnaseq's past year of commit activity
    Python 5 14 8 2 Updated Nov 18, 2025
  • czi-convert Public
    cnio-bu/czi-convert's past year of commit activity
    Python 0 0 0 0 Updated Oct 31, 2025
  • ST-preprocess Public

    Pipelines to preprocess 10x Visium data, including spot filtering and deconvolution, normalization and beyondcell score calculation.

    cnio-bu/ST-preprocess's past year of commit activity
    R 2 MIT 1 0 0 Updated Nov 29, 2024

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