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@kr-colab

Kern-Ralph CoLab

Repositories associated with the collaborary research group of Andrew Kern and Peter Ralph

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  1. diploSHIC diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 60 17

  2. locator locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 55 15

  3. popvae popvae Public

    genotype dimensionality reduction with a VAE

    Python 51 10

  4. ReLERNN ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 76 16

  5. spaceness spaceness Public

    Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

    HTML 8 3

  6. pg_gpu pg_gpu Public

    GPU accelerated population genetics statistics package

    Python 35 7

Repositories

Showing 10 of 38 repositories
  • discoal Public

    discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

    kr-colab/discoal's past year of commit activity
    TeX 50 GPL-3.0 11 1 1 Updated Nov 12, 2026
  • kr-colab/Ecolocator-paper's past year of commit activity
    TeX 1 3 0 1 Updated Nov 11, 2026
  • pg_gpu Public

    GPU accelerated population genetics statistics package

    kr-colab/pg_gpu's past year of commit activity
    Python 35 MIT 7 47 3 Updated Nov 11, 2026
  • ecolocator Public
    kr-colab/ecolocator's past year of commit activity
    Python 2 3 0 1 Updated Nov 11, 2026
  • illex Public

    Illex paper

    kr-colab/illex's past year of commit activity
    TeX 0 0 0 1 Updated Nov 9, 2026
  • mkado Public

    A McDonald-Kreitman test implementation

    kr-colab/mkado's past year of commit activity
    Python 13 MIT 3 5 0 Updated Nov 7, 2026
  • balanus_genome_ms Public

    Working repo for the Balanus genome paper

    kr-colab/balanus_genome_ms's past year of commit activity
    Python 0 2 0 0 Updated Nov 7, 2026
  • mapNN Public

    neural network for estimating demographic maps from SNPs

    kr-colab/mapNN's past year of commit activity
    Python 13 MIT 1 3 0 Updated Oct 13, 2026
  • disperseNN2 Public

    estimating dispersal distance from georeferenced polymorphisms

    kr-colab/disperseNN2's past year of commit activity
    Python 4 MIT 3 7 0 Updated Oct 13, 2026
  • disperseNN Public

    Estimating dispersal using deep neural networks

    kr-colab/disperseNN's past year of commit activity
    Python 7 3 0 0 Updated Oct 13, 2026