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Master course exercises in remote sensing & geomatics: Sentinel-2, hyperspectral (HyMap/EnMAP), ML classification & regression, airborne/terrestrial LiDAR - in R, QGIS and CloudCompare

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Advanced Remote Sensing & Geomatics – Exercises

R QGIS CloudCompare License

A collection of my solutions to the exercises of the master course Advanced Remote Sensing and Geomatics (winter term 2023/24). The exercises cover the full chain from raw geodata to thematic maps: terrain analysis, multispectral and hyperspectral image analysis, machine-learning classification and regression, and airborne / terrestrial LiDAR processing – mostly in R, complemented by QGIS and CloudCompare.

Sentinel-2 false-colour composite of Berlin with training polygons HyMap false-colour image with tree species reference samples Terrestrial laser scan of a pine stand

Skills demonstrated

Area Methods / tools
Raster & vector GIS terra: cropping, reprojection, zonal statistics, map algebra, raster ↔ vector extraction
Terrain analysis SRTM DEM, slope / aspect, reclassification, hillshade, elevation–temperature regression
Multispectral RS Sentinel-2 L1C/L2A preprocessing (sen2r), spectral signatures, feature spaces, NDVI / EVI / PVI
Hyperspectral RS HyMap & EnMAP data, spectral libraries, SVM and random forest (hyper-parameter tuning, CV)
Machine learning Tree-species classification, above-ground biomass regression, variable importance
Airborne LiDAR lidR: ground classification (CSF), DTM/DSM/CHM, individual tree detection & segmentation, area-based metrics
Terrestrial LiDAR CloudCompare + 3DFin: stem detection, DBH and tree height estimation
Desktop GIS QGIS: digitizing training data on 20 cm true orthophotos, map projects

Exercises

# Exercise Topic Data Tools
01 R fundamentals R basics, data frames, climate normals & t-test DWD station data R
02 DEM terrain analysis Slope, aspect & elevation classes (Guelb er Richat, Black Forest) SRTM 1″ terra
03 Temperature vs. elevation Linear regression, raster interpolation, zonal statistics per municipality SRTM, DWD, ALKIS terra, QGIS
04 Sentinel-2 preprocessing SAFE → GeoTIFF, subsetting, RGB / false-colour composites Sentinel-2 sen2r, terra, QGIS
05 Spectral indices & land cover Spectral signatures, feature spaces, NDVI / EVI / PVI Sentinel-2 terra
06 Hyperspectral tree species SVM & random forest classification of 5 tree species HyMap (125 bands) e1071, randomForest
07 EnMAP biomass regression Random forest regression of above-ground biomass EnMAP (195 bands) randomForest, tidyterra
08 LiDAR DTM / CHM & tree segmentation DTM, DSM, CHM, local-maximum tree tops, Dalponte segmentation Berlin ALS lidR
09 LiDAR metrics & forest stands Pixel- and tree-level metrics vs. forest inventory Berlin ALS, forest stands lidR, ggplot2
10 TLS stem detection DBH / height from terrestrial laser scanning TLS pine stand CloudCompare, 3DFin
11–12 Land-cover digitizing Training-data digitizing on RGB / CIR orthophotos Berlin TrueDOP 20 cm QGIS

Rendered reports (no R needed): GitHub Pages

Spectral signatures of land-cover classes SVM tree species classification Random forest biomass map

Getting started

The code is in this repository; the input data (~3.5 GB, mostly point clouds and imagery) is attached to the data-v1.0 release and downloaded on demand with checksum verification.

git clone https://github.com/toihr/Advanced-Remote-Sensing-Exercises.git
cd Advanced-Remote-Sensing-Exercises
Rscript install_packages.R   # R packages used in the exercises
Rscript download_all.R       # all data – or per exercise, see below

Per exercise: open the .Rproj in the exercise folder and run source("get_data.R"). Without R: tools/download_data.sh exercises/<name> (Linux/macOS) or .\tools\download_data.ps1 exercises\<name> (Windows).

Repository layout

exercises/<nn-name>/
├── README.md            task, methods, results
├── *.R / *.Rmd / *.qgz  scripts, reports, QGIS projects
├── data/                input data (large files come from the release)
├── data-manifest.csv    which release assets belong to this exercise
└── get_data.R           downloads them
tools/                   download helpers (R, bash, PowerShell) and release build script
docs/                    rendered HTML reports (GitHub Pages)

Data & license

Code: MIT. Data belongs to the respective providers – see DATA.md for sources and terms. Exercise tasks were set by the course; the solutions are my own work.

About

Master course exercises in remote sensing & geomatics: Sentinel-2, hyperspectral (HyMap/EnMAP), ML classification & regression, airborne/terrestrial LiDAR - in R, QGIS and CloudCompare

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